The Gene Ontology Handbook
This book is open access under a CC BY 4.0 license. This book provides a practical and self-contained overview of the Gene Ontology (GO), the leading project to organize biological knowledge on genes and their products across genomic resources. Written for biologists and bioinformaticians, it covers...
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| Other Authors: | , |
| Format: | Electronic eBook |
| Language: | English |
| Published: |
New York, NY :
Springer New York : Imprint: Humana,
2017.
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| Edition: | 1st ed. 2017. |
| Series: | Methods in Molecular Biology,
1446 |
| Subjects: | |
| Online Access: | Link to Metadata |
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Table of Contents:
- Primer on Ontologies
- The Gene Ontology and the Meaning of Biological Function
- Primer on the Gene Ontology
- Best Practices in Manual Annotation with the Gene Ontology
- Computational Methods for Annotation Transfers from Sequence
- Text Mining to Support Gene Ontology Curation and Vice Versa
- How Does the Scientific Community Contribute to Gene Ontology?
- Evaluating Computational Gene Ontology Annotations
- Evaluating Functional Annotations of Enzymes Using the Gene Ontology
- Community-Based Evaluation of Computational Function Prediction
- Get GO!: Retrieving GO Data Using AmiGO, QuickGO, API, Files, and Tools
- Semantic Similarity in the Gene Ontology
- Gene-Category Analysis
- Gene Ontology: Pitfalls, Biases, and Remedies
- Visualizing GO Annotations
- A Gene Ontology Tutorial in Python
- Annotation Extensions
- The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations
- Complementary Sources of Protein Functional Information: The Far Side of GO
- Integrating Bio-Ontologies and Controlled Clinical Terminologies: From Base Pairs to Bedside Phenotypes
- The Vision and Challenges of the Gene Ontology.