Search Results - "Population genomics"

Evolutionary Genomics Statistical and Computational Methods /

Table of Contents: “…Asexual Species -- Selection Acting on Genomes -- Looking for Darwin in Genomic Sequences: Validity and Success Depends on the Relationship between Model and Data -- Evolution of Viral Genomes: Interplay between Selection, Recombination, and Other Forces -- Evolution of Protein Domain Architectures -- New Insights on the Evolution of GenomeContent: Population Dynamics of Transposable Elements in Flies and Humans -- Association Mapping and Disease: Evolutionary Perspectives -- Ancestral Population Genomics -- Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN -- Multiple Data Analyses and Statistical Approaches for Analyzing Data from Metagenomic Studies and Clinical Trials -- Systems Genetics for Evolutionary Studies -- Analyzing Epigenome Data in Context of Genome Evolution and Human Diseases -- Semantic Integration and Enrichment of Heterogeneous Biological Databases -- High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE -- Scalable Workflows and Reproducible Data Analysis for Genomics -- Sharing Programming Resources between Bio* Projects.…”
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Evolutionary Genomics Statistical and Computational Methods

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Introduction of Mycobacterium ulcerans disease in the Bankim Health District of Cameroon follows damming of the Mapé River. by Koen Vandelannoote, Gerd Pluschke, Miriam Bolz, Martin W Bratschi, Sarah Kerber, Timothy P Stinear, Bouke C de Jong

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Evolutionary Genomics Statistical and Computational Methods

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Buruli Ulcer Mycobacterium Ulcerans Disease /

Table of Contents: “…Buruli Ulcer: History and Disease Burden -- Buruli Ulcer in Africa -- Buruli Ulcer in Australia -- Mycobacterium Ulcerans Infection in French Guiana; Current State of Knowledge -- Buruli Ulcer in Japan -- Population Genomics and Molecular Epidemiology of Mycobacterium Ulcerans -- Mycolactone: More Than Just a Cytotoxin -- The Immunology of Buruli Ulcer -- Buruli Ulcer in Animals and Experimental Infection Models -- Laboratory Diagnosis of Buruli Ulcer: Challenges and Future Perspectives -- Antimicrobial Treatment of Mycobacterium Ulcerans Infection -- Thermotherapy of Buruli Ulcer -- Secondary Infection of Buruli Ulcer Lesions -- Management of BU-HIV Co-infection -- Social Science Contributions to BU Focused Health Service Research in West-Africa -- Transdisciplinary Research and Action to Stop Buruli Ulcer- A Case Study from Philanthropy.…”
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Genomic research perspectives in Kazakhstan by Ainur Akilzhanova

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The Pangenome Diversity, Dynamics and Evolution of Genomes /

Table of Contents: “…Part 1: Genomic diversity and the pan-genome concept -- Chapter 1: The pan-genome: a data-drivendiscovery in biology -- Chapter 2: The prokaryotic species concept and challenges -- Chapter 3: Bacterial guide on how to design a diversified gene portfolio -- Chapter 4: A review of pan-genome tools and recent studies -- Part 2: Evolutionary biology of pan-genomes -- Chapter 5: Structure and dynamics of bacterial populations: pan-genome ecology -- Chapter 6: Bacterial microevolution and the pan-genome -- Chapter 7: Pan-genomes and selection: the public goods hypothesis -- Chapter 8: A pan-genomic perspective on the emergence, maintenance and predictability of antibiotic resistance -- Part 3: Pan-genomics: an open, evolving discipline -- Chapter 9: Metapangenome: at the crossroad of pangenomics and metagenomics -- Chapter 10: Pan-genome flux balance analysis towards pan-phenomes -- Chapter 11: Bacterial epigenomics: epigenetics in the age of population genomics -- Chapter 12: Eukaryotic pan-genomes -- Chapter 13: Computational strategies for eukaryotic pan-genome analyses.…”
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Evidence of hybridization, mitochondrial introgression and biparental inheritance of the kDNA minicircles in Trypanosoma cruzi I. by Fanny Rusman, Noelia Floridia-Yapur, Paula G Ragone, Patricio Diosque, Nicolás Tomasini

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The pharmacogenomic landscape of an Indigenous Australian population by Sumudu Rangika Samarasinghe, Wendy Hoy, Sudhir Jadhao, Brendan J. McMorran, Henk-Jan Guchelaar, Shivashankar H. Nagaraj, Shivashankar H. Nagaraj

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The genome sequence of Trypanosoma brucei gambiense, causative agent of chronic human african trypanosomiasis. by Andrew P Jackson, Mandy Sanders, Andrew Berry, Jacqueline McQuillan, Martin A Aslett, Michael A Quail, Bridget Chukualim, Paul Capewell, Annette MacLeod, Sara E Melville, Wendy Gibson, J David Barry, Matthew Berriman, Christiane Hertz-Fowler

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LDSplitDB: a database for studies of meiotic recombination hotspots in MHC using human genomic data by Jing Guo, Hao Chen, Peng Yang, Yew Ti Lee, Min Wu, Teresa M. Przytycka, Chee Keong Kwoh, Jie Zheng

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Cytotaxonomic characterization and estimation of migration patterns of onchocerciasis vectors (Simulium damnosum sensu lato) in northwestern Ethiopia based on RADSeq data. by Shannon M Hedtke, Rory J Post, Sindew Mekasha Feleke, Fikre Seife Gebretsadik, Daniel A Boakye, Andreas Krueger, Warwick N Grant, Craig S Wilding

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Worldwide Phylogenetic Distributions and Population Dynamics of the Genus Histoplasma. by Marcus de M Teixeira, José S L Patané, Maria L Taylor, Beatriz L Gómez, Raquel C Theodoro, Sybren de Hoog, David M Engelthaler, Rosely M Zancopé-Oliveira, Maria S S Felipe, Bridget M Barker

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Genomic insights into virulence factors affecting tissue-invasive Klebsiella pneumoniae infection by Takashi Matono, Masatomo Morita, Nodoka Nakao, Yuji Teshima, Makoto Ohnishi

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Data Journeys in the Sciences

Table of Contents: “…A Data Journey through Dataset-Centric Population Genomics (J Griesemer) -- Part III: Sharing: Data access, Dissemination and Quality Assessment -- Chapter 9. …”
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Population-based genomic study of Plasmodium vivax malaria in seven Brazilian states and across South AmericaResearch in context by Amy Ibrahim, Emilia Manko, Jamille G. Dombrowski, Mónica Campos, Ernest Diez Benavente, Debbie Nolder, Colin J. Sutherland, Francois Nosten, Diana Fernandez, Gabriel Vélez-Tobón, Alberto Tobón Castaño, Anna Caroline C. Aguiar, Dhelio Batista Pereira, Simone da Silva Santos, Martha Suarez-Mutis, Silvia Maria Di Santi, Andrea Regina de Souza Baptista, Ricardo Luiz Dantas Machado, Claudio R.F. Marinho, Taane G. Clark, Susana Campino

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Genomic technologies to improve variation identification in undiagnosed diseases by Joseph T.C. Shieh

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Dispersal patterns of Trypanosoma cruzi in Arequipa, Peru. by Alexander S F Berry, Renzo Salazar-Sánchez, Ricardo Castillo-Neyra, Katty Borrini-Mayorí, Claudia Arevalo-Nieto, Claudia Chipana-Ramos, Melina Vargas-Maquera, Jenny Ancca-Juarez, César Náquira-Velarde, Michael Z Levy, Dustin Brisson

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Genomic diversity and differentiation of Alu insertion polymorphisms in a native British and four South Asian migrant populations by Rebekah Beaumont, Liz Akam, Puneetpal Singh, Jasvinder Singh Bhatti, Sarabjit Mastana

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Functional study of DAND5 variant in patients with Congenital Heart Disease and laterality defects by Fernando Cristo, José M. Inácio, Salomé de Almeida, Patrícia Mendes, Duarte Saraiva Martins, José Maio, Rui Anjos, José A. Belo

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