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Evolutionary Genomics Statistical and Computational Methods /
Published 2019Table of Contents: “…Introduction to Genome Biology and Diversity -- Probability, Statistics, and Computational Science -- A Not-So-Long Introduction to Computational Molecular Evolution -- Whole-Genome Alignment -- Inferring Orthology and Paralogy -- Transposable Elements and Their Identification -- Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model -- Genome-Wide Comparative Analysis of Phylogenetic Trees: The Prokaryotic Forest of Life -- The Methodology Behind Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution -- Bayesian Molecular Clock Dating Using Genome-Scale Datasets -- Genome Evolution in Outcrossing vs. …”
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Tools and Algorithms for the Construction and Analysis of Systems 27th International Conference, TACAS 2021, Held as Part of the European Joint Conferences on Theory and Practice o...
Published 2021Table of Contents: “…Verification Techniques (not SMT) -- Directed Reachability for Infinite-State Systems -- Bridging Arrays and ADTs in Recursive Proofs -- A Two-Phase Approach for Conditional Floating-Point Verification -- Symbolic Coloured SCC Decomposition -- Case Studies -- Local Search with a SAT Oracle for Combinatorial Optimization -- Analyzing Infrastructure as Code to Prevent Intra-update Sniping Vulnerabilities -- Proof Generation/Validation -- Certifying Proofs in the First-Order Theory of Rewriting -- Syntax-Guided Quantifier Instantiation -- Making Theory Reasoning Simpler -- Deductive Stability Proofs for Ordinary Differential Equations -- Tool Papers -- An SMT-Based Approach for Verifying Binarized Neural Networks -- cake lpr: Verified Propagation Redundancy Checking in CakeML -- Deductive Veri cation of Floating-Point Java Programs in KeY -- Helmholtz: A Verifier for Tezos Smart Contracts Based on Refinement Types -- SyReNN: A Tool for Analyzing Deep Neural Networks -- MachSMT: A Machine Learning-based Algorithm Selector for SMT Solvers -- dtControl 2.0: Explainable Strategy Representation via Decision Tree Learning Steered by Experts -- Tool Demo Papers -- HLola: a Very Functional Tool for Extensible Stream Runtime Verification -- AMulet 2.0 for Verifying Multiplier Circuits -- RTLola on Board: Testing Real Driving Emissions on your Phone -- Replicating Restart with Prolonged Retrials: An Experimental Report -- A Web Interface for Petri Nets with Transits and Petri Games -- Momba: JANI Meets Python -- SV-Comp Tool Competition Papers -- Software Veri cation: 10th Comparative Evaluation (SV-COMP 2021) -- CPALockator: Thread-Modular Approach with Projections (Competition Contribution) -- Dartagnan: Leveraging Compiler Optimizations and the Price of Precision (Competition Contribution) -- Gazer-Theta: LLVM-based Veri er Portfolio with BMC/CEGAR (Competition Contribution) -- Goblint: Thread-Modular Abstract Interpretation Using Side-Effecting Constraints (Competition Contribution) -- Towards String Support in JayHorn (Competition Contribution) -- JDart: Portfolio Solving, Breadth-First Search and SMT-Lib Strings (Competition Contribution) -- Symbiotic 8: Beyond Symbolic Execution (Competition Contribution) -- VeriAbs: A Tool for Scalable Verification by Abstraction (Competition Contribution).…”
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Computer Aided Verification 33rd International Conference, CAV 2021, Virtual Event, July 20-23, 2021, Proceedings, Part II /
Published 2021Table of Contents: “…Complexity and Termination -- Learning Probabilistic Termination Proofs -- Ghost Signals: Verifying Termination of Busy Waiting -- Reflections on Termination of Linear Loops -- Decision Tree Learning in CEGIS-Based Termination Analysis -- ATLAS: Automated Amortised Complexity Analysis of Self-Adjusting Data Structures -- Decision Procedures and Solvers -- Theory Exploration Powered by Deductive Synthesis -- CoqQFBV: A Scalable Certified SMT Quantifier-Free Bit-Vector Solver -- Porous Invariants -- JavaSMT 3: Interacting with SMT Solvers in Java -- Efficient SMT-based Analysis of Failure Propagation -- ToolX : Better Delta Debugging for the SMT-LIBv2 Language and Friends -- Learning Union of Integer Hypercubes with Queries (with applications to monadic decomposition) -- Interpolation and Model Checking for Nonlinear Arithmetic -- An SMT Solver for Regular Expressions and Linear Arithmetic over String Length -- Counting Minimal Unsatisfiable Subsets -- Sound Verification Procedures for Temporal Properties of Infinite-State Systems -- Hardware and Model Checking -- Progress in Certifying Hardware Model Checking Results -- Model-Checking Structured Context-Free Languages -- Model Checking ! …”
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3964
Tools and Algorithms for the Construction and Analysis of Systems 29th International Conference, TACAS 2023, Held as Part of the European Joint Conferences on Theory and Practice o...
Published 2023Table of Contents: “…-A Learner-Verifier Framework for Neural Network Controllers and Certificates of Stochastic Systems -- Model Checking -- Bounded Model Checking for Asynchronous Hyperproperties -- Model Checking Linear Dynamical Systems under Floating-point Rounding -- Efficient Loop Conditions for Bounded Model Checking Hyperproperties -- Reconciling Preemption Bounding with DPOR -- Optimal Stateless Model Checking for Causal Consistency -- Symbolic Model Checking for TLA+ Made Faster -- AutoHyper: Explicit-State Model Checking for HyperLTL -- Machine Learning/Neural Networks -- Feature Necessity & Relevancy in ML Classifier Explanations -- Towards Formal XAI: Formally Approximate Minimal Explanations of Neural Networks -- OccRob: Effcient SMT-Based Occlusion Robustness Verification of Deep Neural Networks -- Neural Network-Guided Synthesis of Recursive List Functions -- Automata -- Modular Mix-and-Match Complementation of Buechi automata -- Validating Streaming JSON Documents With Learned VPAs -- Antichains Algorithms for the Inclusion Problem Between ω -VPL -- Stack-Aware Hyperproperties -- Proofs -- Propositional Proof Skeletons -- Unsatisfiability Proofs for Distributed Clause-Sharing SAT Solvers -- Carcara: An effcient proof checker and elaborator for SMT proofs in the Alethe format -- Constraint Solving/Blockchain -- The Packing Chromatic Number of the Infinite Square Grid is 15 -- Active Learning for SAT Solver Benchmarking -- ParaQooba: A Fast and Flexible Framework for Parallel and Distributed QBF Solving -- Inferring Needless Write Memory Accesses on Ethereum Bytecode -- Markov Chains/Stochastic Control -- A Practitioner's Guide to MDP Model Checking Algorithms -- Correct Approximation of Stationary Distributions -- Robust Almost-Sure Reachability in Multi-Environment MDPs -- Mungojerrie: Linear-Time Objectives in Model-Free Reinforcement Learning -- Verification -- A Formal CHERI-C Semantics for Verification -- Automated Verification for Real-Time Systems via Implicit Clocks and an Extended Antimirov Algorithm -- Parameterized Verification under TSO with Data Types -- Verifying Learning-Based Robotic Navigation Systems: A Case Study -- Make flows small again: revisiting the flow framework -- ALASCA: Reasoning in Quantified Linear Arithmetic -- A Matrix-Based Approach to Parity Games -- A GPU Tree Database for Many-Core Explicit State Space Exploration.…”
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3965
Fostering Transformative Change for Sustainability in the Context of Socio-Ecological Production Landscapes and Seascapes (SEPLS)
Published 2021Table of Contents: “…Social-ecological transformation through planting mixed tree species on abandoned agricultural land in the hills of Nepal -- Chapter 6. …”
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