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81
Immunogenetics Methods and Protocols /
Published 2022Table of Contents: “…The Advent of Precision Immunology: Immunogenetics at the Center of Immune Cell Analysis in Health and Disease -- Next-Generation Sequencing-Based Clonality Detection of Immunoglobulin Gene Rearrangements in B-Cell Lymphoma -- One-Step Next Generation Sequencing of Immunoglobulin and T-Cell Receptor Gene Recombinations for MRD Marker Identification in Acute Lymphoblastic Leukemia -- Immunoglobulin/T-Cell Receptor Gene Rearrangement Analysis Using RNA-Seq -- Minimal Residual Disease Analysis by Monitoring Immunoglobulin and T-Cell Receptor Gene Rearrangements by Quantitative PCR and Droplet Digital PCR -- Quality Control for IG/TR Marker Identification and MRD Analysis -- cfDNA-Based NGS IG Analysis in Lymphoma -- Targeted Locus Amplification as Marker Screening Approach to Detect Immunoglobulin (IG) Translocations in B-Cell Non-Hodgkin Lymphomas -- Immunoglobulin/T-Cell Receptor Capture Strategy for Comprehensive Immunogenetics -- Immunoglobulin Gene Mutational Status Assessment by Next Generation Sequencing in Chronic Lymphocytic Leukemia -- NGS-Based B-Cell Receptor Repertoire Analysis in the Context of Inborn Errors of Immunity -- Generic Multiplex Digital PCR for Accurate Quantification of T-Cells in Copy Number Stable and Unstable DNA Samples -- Gene Engineering T-Cells with T-Cell Receptor for Adoptive Therapy -- Combined Analysis of Transcriptome and T-Cell Receptor Alpha Beta (TRA/TRB) Repertoire in Paucicellular Samples at the Single Cell Level -- AIRR Community Guide to Planning and Performing AIRR-Seq Experiments -- Adaptive Immune Receptor Repertoires (AIRR) Community Guide to TR and IG Gene Annotation -- Adaptive Immune Receptor Repertoires (AIRR) Community Guide to Repertoire Analysis -- Bulk gDNA Sequencing of Antibody Heavy Chain Gene Rearrangements for Detection and Analysis of B-Cell Clone Distribution: A Method by the AIRR Community -- Bulk Sequencing from mRNA with UMI for Evaluation of B-Cell Isotype and Clonal Evolution: A Method by the AIRR Community -- Single Cell Analysis and Tracking of Antigen-Specific T-Cells: Integrating Paired-Chain AIRR-Seq and Transcriptome Sequencing: A Method by the AIRR Community -- Quality Control: Chain Pairing Precision and Monitoring of Cross-Sample Contamination: A Method by the AIRR Community -- Immune Repertoire Analysis on High-Performance Computing Using VDJServer V1: A Method by the AIRR Community -- Data Sharing and Re-Use: A Method by the AIRR Community -- IMGT® Immunoinformatics Tools for Standardized V-DOMAIN Analysis -- IMGT/3Dstructure-DB: T-Cell Receptor TR Paratope and Peptide/Major Histocompatibility pMH Contact Sites and Epitope -- ARResT/Interrogate Immunoprofiling Platform: Concepts, Workflows, and Insights -- Purpose-Built Immunoinformatics for BcR IG/TR Repertoire Data Analysis.…”
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82
Whole-Body Regeneration Methods and Protocols /
Published 2022Table of Contents: “…-Studying Tunicata WBR using Botrylloides anceps -- In Situ Hybridization to Identify Stem Cells in the Freshwater Sponge Ephydatia fluviatilis -- Isolation and Maintenance of In Vitro Cell Cultures from the Ctenophore Mnemiopsis leidyi -- Analysis of Spatial Gene Expression at the Cellular Level in Stony Corals -- Studying Stem Cell Biology in Intact and Whole-Body Regenerating Hydra by Flow Cytometry -- Non-Invasive Intra-Vascular Micro-Transfusion in Colonial Tunicates -- Gene Manipulation in Hydractinia -- Manipulation of Gene Activity in the Regenerative Model Sea Anemone, Nematostella vectensis -- Monitoring Telomere Maintenance during Regeneration of Annelids -- Analysis of DNA Double Stranded Breaks using the COMET Assay in Planarians -- Random Integration Transgenesis in a Free-Living Regenerative Flatworm Macrostomum lignano -- RNAi Screening to Assess Tissue Regeneration in Planarians -- Monitoring Chromatin Regulation in Planarians using Chromatin Immunoprecipitation followed by Sequencing (ChIP-seq) -- Assessing Chromatin Accessibility during WBR in Acoels -- Single Cell Transcriptomic Analysis in the Regenerating Cnidarian Nematostella vectensis -- Characterization of Soluble Cell-Free Coelomic Fluid Proteome from the Starfish Marthasterias glacialis -- Using RNA-Sequencing for Transcriptome Profiling of Botrylloides sp. …”
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83
Ribosome Biogenesis Methods and Protocols /
Published 2022Table of Contents: “…A Comparative Perspective on Ribosome Biogenesis: Unity and Diversity across the Tree of Life -- Establishment and Maintenance of Open Ribosomal RNA Gene Chromatin States in Eukaryotes -- Analysis of Yeast RNAP I Transcription of Nucleosomal Templates In Vitro -- Specialization of RNA Polymerase I in Comparison to Other Nuclear RNA Polymerases of Saccharomyces cerevisiae -- Structural Studies of Eukaryotic RNA Polymerase I using Cryo-Electron Microscopy -- Preparation of RNA Polymerase Complexes for their Analysis by Single Particle Cryo-Electron Microscopy -- Eukaryotic Ribosome Assembly and Nucleo-Cytoplasmic Transport -- Tethered MNase Structure Probing as Versatile Technique for Analyzing RNPs using Tagging Cassettes for Homologous Recombination in Saccharomyces cerevisiae -- Chemical Modifications of Ribosomal RNA -- In Vitro Selection of Deoxyribozymes for the Detection of RNA Modifications -- Mapping of the Chemical Modificationsof rRNAs -- Non-Radioactive In Vivo Labelling of RNA with 4-thio-uracil -- Translation Phases in Eukaryotes -- Differential Translation Activity using Bio-Orthogonal Non-Canonical Amino Acids Tagging (BONCAT) in Archaea -- Thermofluor-Based Analysis of Protein Integrity and Ligand Interactions -- In Vitro Assembly of a Fully Reconstituted Yeast Translation System for Studies of Initiation and Elongation Phases of Protein Synthesis.…”
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84
All-Optical Methods to Study Neuronal Function
Published 2023Table of Contents: “…Optical Manipulation and Recording of Neural Activity with Wavefront Engineering -- Balancing the Fluorescence Imaging Budget for All-Optical Neurophysiology Experiments -- Light-Based Neuronal Circuit Probing in Living Brains at High-Resolution: Constraints and Layouts for Integrating Neuronal Activity Recording and Modulation in Three Dimensions -- High Speed All-Optical Neural Interfaces with 3D Temporally Focused Holography -- An All-Optical Physiology Pipeline towards Highly Specific and Artefact-Free Circuit Mapping -- Spatial and Temporal Considerations of Optogenetic Tools in an All-Optical Single-Beam Experiment -- Miniature Multiphoton Microscopes for Recording Neural Activity in Freely Moving Animals -- Optogenetics and Light Sheet Microscopy -- Widefield Multiphoton Imaging at Depth with Temporal Focusing -- High-Speed Neural Imaging with Synaptic Resolution: Bessel Focus Scanning Two-Photon Microscopy and Optical-Sectioning Widefield Microscopy -- Optical and Analytical Methods to Visualize and Manipulate Contrical Ensembles and Behavior -- Illuminating Neural Computation using Precision Optogenetics-Controlled Synthetic Perception -- Spectrally-Focused Stimulated Raman Scattering (sf-SRS) Microscopy for Label-Free Investigations of Molecular Mechanisms in Living Organisms.…”
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85
Machine Learning for Brain Disorders
Published 2023Table of Contents: “…A Non-Technical Introduction to Machine Learning -- Classic Machine Learning Methods -- Deep Learning: Basics and Convolutional Neural Networks (CNN) -- Recurrent Neural Networks (RNN) - Architectures, Training Tricks, and Introduction to Influential Research -- Generative Adversarial Networks and Other Generative Models -- Transformers and Visual Transformers -- Clinical Assessment of Brain Disorders -- Neuroimaging in Machine Learning for Brain Disorders -- Electroencephalography and Magnetoencephalography -- Working with Omics Data, An Interdisciplinary Challenge at the Crossroads of Biology and Computer Science -- Electronic Health Records as Source of Research Data -- Mobile Devices, Connected Objects, and Sensors -- Medical Image Segmentation using Deep Learning -- Image Registration: Fundamentals and Recent Advances Based on Deep Learning -- Computer-Aided Diagnosis and Prediction in Brain Disorders -- Subtyping Brain Diseases from Imaging Data -- Data-Driven Disease Progression Modelling -- Computational Pathology for Brain Disorders -- Integration of Multimodal Data -- Evaluating Machine Learning Models and their Diagnostic Value -- Reproducibility in Machine Learning for Medical Imaging -- Interpretability of Machine Learning Methods Applied to Neuroimaging -- A Regulatory Science Perspective on Performance Assessment of Machine Learning Algorithms in Imaging -- Main Existing Datasets for Open Brain Research on Humans -- Machine Learning for Alzheimer's Disease and Related Dementias -- Machine Learning for Parkinson's Disease and Related Disorders -- Machine Learning in Neuroimaging of Epilepsy -- Machine Learning in Multiple Sclerosis -- Machine Learning for Cerebrovascular Disorders -- The Role of Artificial Intelligence in Neuro-Oncology Imaging -- Machine Learning for Neurodevelopmental Disorders -- Machine Learning and BrainImaging for Psychiatric Disorders: New Perspectives.…”
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86
Fungal Disease in Britain and the United States 1850-2000 Mycoses and Modernity /
Published 2013Subjects: “…US History.…”
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87
The Economics of the Audiovisual Industry: Financing TV, Film and Web
Published 2014Link to Metadata
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88
Multiculturalism and Conflict Reconciliation in the Asia-Pacific Migration, Language and Politics /
Published 2014Link to Metadata
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89
Pynchon and Philosophy Wittgenstein, Foucault and Adorno /
Published 2014Subjects: “…Literature, Modern-20th century.…”
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90
Rethinking Interdisciplinarity across the Social Sciences and Neurosciences
Published 2015Link to Metadata
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91
A Philosophical Examination of Social Justice and Child Poverty
Published 2015Link to Metadata
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92
A History of Male Psychological Disorders in Britain, 1945-1980
Published 2015Link to Metadata
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93
How Generations Remember Conflicting Histories and Shared Memories in Post-War Bosnia and Herzegovina /
Published 2016Table of Contents: “…Researching Memory and Generation -- Chapter 1. Fragments of Communicative Memory: WWII, Tito and the 1992-95 War -- Chapter 2. …”
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94
Seeing Ourselves Through Technology How We Use Selfies, Blogs and Wearable Devices to See and Shape Ourselves /
Published 2014Link to Metadata
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95
Constructions of Cancer in Early Modern England Ravenous Natures /
Published 2015Link to Metadata
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98
New Frontiers in Social Innovation Research
Published 2015Subjects: “…Politics of the Welfare State. http://scigraph.springernature.com/things/product-market-codes/X33050…”
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99
Punishing the Criminal Corpse, 1700-1840 Aggravated Forms of the Death Penalty in England /
Published 2017Table of Contents: “…Chapter 1. Introduction -- Chapter 2. 'Hanging Not Punishment Enough'; Attitudes to Aggravated Forms of Execution and the Making of the Murder Act 1690-1752 -- Chapter 3. …”
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100
Target Suitability and the Crime Drop
Published 2015Subjects: “…Crime Control and Security. http://scigraph.springernature.com/things/product-market-codes/1BE000…”
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