Editorial: Pathogen Genomics: Empowering Infectious Disease Surveillance and Outbreak Investigations by Marc J. Struelens, Vitali Sintchenko

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Advances in Clinical Sample Preparation for Identification and Characterization of Bacterial Pathogens Using Metagenomics by Nathan L. Bachmann, Nathan L. Bachmann, Rebecca J. Rockett, Rebecca J. Rockett, Verlaine Joy Timms, Vitali Sintchenko, Vitali Sintchenko

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Extensive Homoplasy but No Evidence of Convergent Evolution of Repeat Numbers at MIRU Loci in Modern Mycobacterium tuberculosis Lineages by Alexander C. Outhred, Alexander C. Outhred, Alexander C. Outhred, Ulziijargal Gurjav, Peter Jelfs, Peter Jelfs, Nadine McCallum, Qinning Wang, Grant A. Hill-Cawthorne, Grant A. Hill-Cawthorne, Ben J. Marais, Ben J. Marais, Vitali Sintchenko, Vitali Sintchenko, Vitali Sintchenko

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Impact of Whole-Genome Sequencing of <i>Mycobacterium tuberculosis</i> on Treatment Outcomes for MDR-TB/XDR-TB: A Systematic Review by Druti Hazra, Connie Lam, Kiran Chawla, Vitali Sintchenko, Vijay Shree Dhyani, Bhumika T. Venkatesh

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Persistence of the Omicron variant of SARS-CoV-2 in Australia: The impact of fluctuating social distancing. by Sheryl L Chang, Quang Dang Nguyen, Alexandra Martiniuk, Vitali Sintchenko, Tania C Sorrell, Mikhail Prokopenko

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Prompt control of a Serratia marcescens outbreak in a neonatal intensive care unit informed by whole-genome sequencing and comprehensive infection control intervention package by Annaleise R. Howard-Jones, Catherine Janto, Zoe Jennings, James Branley, Qinning Wang, Vitali Sintchenko, Harsha Samarasekara

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Retrospective use of whole genome sequencing to better understand an outbreak of Salmonella enterica serovar Mbandaka in New South Wales, Australia by Cassia Lindsay, James Flint, Kim Lilly, Kirsty Hope, Qinning Wang, Peter Howard, Vitali Sintchenko, David N Durrheim

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Exploring programmatic indicators of tuberculosis control that incorporate routine Mycobacterium tuberculosis sequencing in low incidence settings: a comprehensive (2017-2021) pati... by Xiaomei Zhang, Elena Martinez, Connie Lam, Taryn Crighton, Eby Sim, Mailie Gall, Ellen J. Donnan, Ben J. Marais, Vitali Sintchenko

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Guiding the design of SARS-CoV-2 genomic surveillance by estimating the resolution of outbreak detection by Carl J. E. Suster, Carl J. E. Suster, Alicia Arnott, Alicia Arnott, Alicia Arnott, Grace Blackwell, Grace Blackwell, Mailie Gall, Mailie Gall, Jenny Draper, Jenny Draper, Elena Martinez, Elena Martinez, Alexander P. Drew, Alexander P. Drew, Rebecca J. Rockett, Rebecca J. Rockett, Sharon C.-A. Chen, Sharon C.-A. Chen, Sharon C.-A. Chen, Jen Kok, Jen Kok, Jen Kok, Dominic E. Dwyer, Dominic E. Dwyer, Dominic E. Dwyer, Vitali Sintchenko, Vitali Sintchenko, Vitali Sintchenko

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Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study by Courtney R Lane, MAE, Norelle L Sherry, MBBS, Ashleigh F Porter, PhD, Sebastian Duchene, PhD, Kristy Horan, PhD, Patiyan Andersson, PhD, Mathilda Wilmot, MPH, Annabelle Turner, MPH, Sally Dougall, MPH, Sandra A Johnson, MPH, Michelle Sait, PhD, Anders Gonçalves da Silva, PhD, Susan A Ballard, PhD, Tuyet Hoang, MPH, Timothy P Stinear, ProfPhD, Leon Caly, PhD, Vitali Sintchenko, ProfPhD, Rikki Graham, PhD, Jamie McMahon, BSc, David Smith, ProfMBBS, Lex EX Leong, PhD, Ella M Meumann, MBBS, Louise Cooley, MBBS, Benjamin Schwessinger, PhD, William Rawlinson, ProfPhD, Sebastiaan J van Hal, ProfPhD, Nicola Stephens, PhD, Mike Catton, MBChB, Clare Looker, MBBS, Simon Crouch, PhD, Brett Sutton, MBBS, Charles Alpren, MBChB, Deborah A Williamson, ProfPhD, Torsten Seemann, PhD, Benjamin P Howden, ProfPhD

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