Guiding the design of SARS-CoV-2 genomic surveillance by estimating the resolution of outbreak detection

• Main Authors: Carl J. E. Suster (Author), Alicia Arnott (Author), Grace Blackwell (Author), Mailie Gall (Author), Jenny Draper (Author), Elena Martinez (Author), Alexander P. Drew (Author), Rebecca J. Rockett (Author), Sharon C.-A. Chen (Author), Jen Kok (Author), Dominic E. Dwyer (Author), Vitali Sintchenko (Author)
• Format: Book
• Published: Frontiers Media S.A., 2022-10-01T00:00:00Z.
• Subjects: article
• Online Access: Connect to this object online.

Genomic surveillance of SARS-CoV-2 has been essential to inform public health response to outbreaks. The high incidence of infection has resulted in a smaller proportion of cases undergoing whole genome sequencing due to finite resources. We present a framework for estimating the impact of reduced d...